Research workbench
AlphaFold monomer V2.0 prediction for putative ribosomal RNA large subunit methyltransferase ywbd (P39587)
Analyse AlphaFold monomer V2.0 prediction for putative ribosomal RNA large subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P39587
- Type
- protein
- Length
- 396 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80E4770D64c852Ea54fa095e4246B7F0d7647117
- Molecule
- Putative ribosomal RNA large subunit methyltransferase ywbd
- UniProt
- P39587
- Pockets
- 2 · best druggability 0.75
Structure
1 distinct chain · 32% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative ribosomal RNA large subunit methyltransferase ywbd | protein | 396 | 32% helix, 31% strand | P39587 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 848 | 0.75 | 0.79 | 80 | empty |
| 2 | 76 | 0.33 | 0.75 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39587
- Elsewhere: UniProt P39587 · AlphaFold DB P39587
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