MolNFT v1 · #535993 · protein
AlphaFold monomer V2.0 prediction for spbeta prophage-derived uncharacterized protein yopk (O31927)
O31927: “AlphaFold monomer V2.0 prediction for spbeta prophage-derived uncharacterized protein yopk (O31927)”. 4 pockets (best druggability 0.71). MolNFT v1 #535993 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- O31927
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x79a905d858Ce72991FD6E7a9C6498620f42E146D
- Molecule
- Spbeta prophage-derived uncharacterized protein yopk
- UniProt
- O31927
- Pockets
- 4 · best druggability 0.71
Structure
1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spbeta prophage-derived uncharacterized protein yopk | protein | 386 | 72% helix, 0% strand | O31927 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 664 | 0.71 | 0.78 | 54 | empty |
| 2 | 137 | 0.39 | 0.74 | 21 | empty |
| 3 | 64 | 0.38 | 0.79 | 15 | empty |
| 4 | 56 | 0.33 | 0.77 | 11 | empty |
Compared structures
- 6HP3 · Arbitrium peptide receptor from spbeta phage · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 6HP3 · Arbitrium peptide receptor from spbeta phage · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 6HP7 · Arbitrium peptide receptor from spbeta phage in complex with 43 mer DNA · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 6HP7 · ARBITRIUM PEPTIDE RECEPTOR FROM SPBETA PHAGE in complex with 43 mer DNA · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 6HP5 · Arbitrium peptide receptor from spbeta phage · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 6HP5 · Arbitrium peptide receptor from spbeta phage · an experimental structure of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31927
- Elsewhere: UniProt O31927 · AlphaFold DB O31927
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