MolNFT v1 · #531515 · protein
AlphaFold monomer V2.0 prediction for transposon TY3-I gag-pol polyprotein (Q7LHG5)
Q7LHG5: “AlphaFold monomer V2.0 prediction for transposon TY3-I gag-pol polyprotein (Q7LHG5)”. 15 pockets (best druggability 0.73). MolNFT v1 #531515 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q7LHG5
- Type
- protein
- Length
- 1,498 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6Ed09D80e98fE15DE51C9E7a8896AbF1f2365C3e
- Molecule
- Transposon TY3-I gag-pol polyprotein
- UniProt
- Q7LHG5
- Pockets
- 15 · best druggability 0.73
Structure
1 distinct chain · 35% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY3-I gag-pol polyprotein | protein | 1498 | 35% helix, 16% strand | Q7LHG5 |
Pockets
15 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1025 | 0.73 | 0.77 | 89 | empty |
| 2 | 930 | 0.73 | 0.77 | 90 | empty |
| 3 | 818 | 0.73 | 0.78 | 69 | empty |
| 4 | 839 | 0.70 | 0.76 | 70 | empty |
| 5 | 244 | 0.64 | 0.82 | 24 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6R24 · The structure of a Ty3 retrotransposon icosahedral capsid · an experimental structure of the same protein · chain A against F, TM-score 0.06
- 6R24 · The structure of a TY3 retrotransposon icosahedral capsid · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 6R23 · The structure of a TY3 retrotransposon capsid C-terminal domain dimer · an experimental structure of the same protein · chain A against A, TM-score 0.05
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7LHG5
- Elsewhere: UniProt Q7LHG5 · AlphaFold DB Q7LHG5
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