MolNFT v1 · #502563 · protein
AlphaFold monomer V2.0 prediction for exo-1,4-beta-xylosidase xlnd (Q5BAS1)
Q5BAS1: “AlphaFold monomer V2.0 prediction for exo-1,4-beta-xylosidase xlnd (Q5BAS1)”. 3 pockets (best druggability 0.72). MolNFT v1 #502563 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q5BAS1
- Type
- protein
- Length
- 803 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x88DB42AFD1c918761d553B3c6CEc7ba83c6f79bC
- Molecule
- Exo-1,4-beta-xylosidase xlnd
- UniProt
- Q5BAS1
- Pockets
- 3 · best druggability 0.72
Structure
1 distinct chain · 29% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Exo-1,4-beta-xylosidase xlnd | protein | 803 | 29% helix, 19% strand | Q5BAS1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 379 | 0.72 | 0.83 | 44 | empty |
| 2 | 141 | 0.41 | 0.74 | 29 | empty |
| 3 | 54 | 0.26 | 0.73 | 14 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 6Q7I · GH3 exo-beta-xylosidase (XlnD) · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 6Q7I · GH3 exo-beta-xylosidase (xlnd) · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 6Q7J · GH3 exo-beta-xylosidase (XlnD) in complex with xylobiose aziridine activity based probe · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 6Q7J · GH3 exo-beta-xylosidase (xlnd) in complex with xylobiose aziridine activity based probe · an experimental structure of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5BAS1
- Elsewhere: UniProt Q5BAS1 · AlphaFold DB Q5BAS1
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