UniProt Q5BAS1
Exo-1,4-beta-xylosidase xlnD (Q5BAS1)
Exo-1,4-beta-xylosidase xlnD (UniProt Q5BAS1), EC 3.2.1.37: 3 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound, 9 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q5BAS1
- Protein
- Exo-1,4-beta-xylosidase xlnD
- EC
- 3.2.1.37
- Experimental structures
- 3
- Predicted models
- 1
- Ligands
- 5
- Pockets
- 9 · 2 records with a druggable one
Structures
4 records of Q5BAS1 in the MolNFT archive: 3 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6Q7I | GH3 exo-beta-xylosidase (XlnD) | x-ray diffraction | B, A | NAG, BMA, MAN, K | 6 (best 0.88) |
| 6Q7I | GH3 exo-beta-xylosidase (xlnd) | x-ray diffraction | B, A | NAG, BMA, MAN, K | — |
| 6Q7J | GH3 exo-beta-xylosidase (xlnd) in complex with xylobiose aziridine activity based probe | x-ray diffraction | B, A | NAG, BMA, MAN, HLB | — |
| Q5BAS1 | AlphaFold monomer V2.0 prediction for exo-1,4-beta-xylosidase xlnd (Q5BAS1) | predicted | A | — | 3 (best 0.72) |
Ligands
- BMA · beta-D-mannopyranose · in 3 records
- MAN · alpha-D-mannopyranose · in 3 records
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 3 records
- K · Potassium ion · in 2 records
- HLB · 5-[3,3-dimethyl-2-[5-(1,3,3-trimethylindol-2-ylidene) penta-1,3-dienyl]indol-1-ium-1-yl]-~{N}-[8-[[(1~{R}, 2~{S},3~{S},4~{S},5~{R})-2,3,4,5-tetrakis(oxidanyl) cyclohexyl]amino]octyl]pentanamide · in 1 record
Experiment against prediction
- 6Q7I chain B against the predicted model Q5BAS1: TM-score 1.00, RMSD 0.49 Å
- 6Q7I chain B against the predicted model Q5BAS1: TM-score 1.00, RMSD 0.49 Å
- 6Q7J chain B against the predicted model Q5BAS1: TM-score 1.00, RMSD 0.49 Å
- 6Q7I chain A against the predicted model Q5BAS1: TM-score 1.00, RMSD 0.52 Å
- 6Q7I chain A against the predicted model Q5BAS1: TM-score 1.00, RMSD 0.52 Å
- 6Q7J chain A against the predicted model Q5BAS1: TM-score 1.00, RMSD 0.54 Å
Elsewhere
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