MolNFT v1 · #502490 · protein
AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase a (P26514)
P26514: “AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase a (P26514)”. 3 pockets (best druggability 0.65). MolNFT v1 #502490 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P26514
- Type
- protein
- Length
- 477 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb4D2d9c96b0D792d0b77e7147D724cc1F801ae58
- Molecule
- Endo-1,4-beta-xylanase a
- UniProt
- P26514
- Pockets
- 3 · best druggability 0.65
Structure
1 distinct chain · 30% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase a | protein | 477 | 30% helix, 23% strand | P26514 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 258 | 0.65 | 0.83 | 33 | empty |
| 2 | 57 | 0.32 | 0.77 | 18 | empty |
| 3 | 54 | 0.26 | 0.73 | 17 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 1E0X · Xylanase 10A from sreptomyces lividans. xylobiosyl-enzyme intermediate at 1.65 a · an experimental structure of the same protein · chain A against A, TM-score 0.64
- 1E0X · Xylanase 10A from sreptomyces lividans. xylobiosyl-enzyme intermediate at 1.65 a · an experimental structure of the same protein · chain A against A, TM-score 0.64
- 1V0M · Xylanase XYN10A from streptomyces lividans in complex with xylobio- deoxynojirimycin at… · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1V0M · Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-deoxynojirimycin at pH… · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1V0L · Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-isofagomine at pH 5.8 · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1V0L · Xylanase XYN10A from streptomyces lividans in complex with xylobio- isofagomine at pH 5.8 · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1V0N · Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-isofagomine at pH 7.5 · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1V0N · Xylanase XYN10A from streptomyces lividans in complex with xylobio- isofagomine at pH 7.5 · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1E0V · Xylanase 10A from sreptomyces lividans. cellobiosyl-enzyme intermediate at 1.7 a · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1E0V · Xylanase 10A from Sreptomyces lividans. cellobiosyl-enzyme intermediate at 1.7 A · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1E0W · Xylanase 10A from Sreptomyces lividans. native structure at 1.2 angstrom resolution · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 1E0W · Xylanase 10A from sreptomyces lividans. native structure at 1.2 ångström resolution · an experimental structure of the same protein · chain A against A, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P26514
- Elsewhere: UniProt P26514 · AlphaFold DB P26514
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