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AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase a (P26514)

Analyse AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase a (P26514) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession
P26514
Type
protein
Length
477 residues
Chains
1
Collection
MolNFT v1 / AlphaFold
Contract
0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner
0xb4D2d9c96b0D792d0b77e7147D724cc1F801ae58
Molecule
Endo-1,4-beta-xylanase a
UniProt
P26514
Pockets
3 · best druggability 0.65

Structure

1 distinct chain · 30% helix, 23% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AEndo-1,4-beta-xylanase aprotein47730% helix, 23% strandP26514

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12580.650.8333empty
2570.320.7718empty
3540.260.7317empty

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

  • 1E0X · Xylanase 10A from sreptomyces lividans. xylobiosyl-enzyme intermediate at 1.65 a · an experimental structure of the same protein · chain A against A, TM-score 0.64
  • 1E0X · Xylanase 10A from sreptomyces lividans. xylobiosyl-enzyme intermediate at 1.65 a · an experimental structure of the same protein · chain A against A, TM-score 0.64
  • 1V0M · Xylanase XYN10A from streptomyces lividans in complex with xylobio- deoxynojirimycin at… · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1V0M · Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-deoxynojirimycin at pH… · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1V0L · Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-isofagomine at pH 5.8 · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1V0L · Xylanase XYN10A from streptomyces lividans in complex with xylobio- isofagomine at pH 5.8 · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1V0N · Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-isofagomine at pH 7.5 · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1V0N · Xylanase XYN10A from streptomyces lividans in complex with xylobio- isofagomine at pH 7.5 · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1E0V · Xylanase 10A from sreptomyces lividans. cellobiosyl-enzyme intermediate at 1.7 a · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1E0V · Xylanase 10A from Sreptomyces lividans. cellobiosyl-enzyme intermediate at 1.7 A · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1E0W · Xylanase 10A from Sreptomyces lividans. native structure at 1.2 angstrom resolution · an experimental structure of the same protein · chain A against A, TM-score 0.63
  • 1E0W · Xylanase 10A from sreptomyces lividans. native structure at 1.2 ångström resolution · an experimental structure of the same protein · chain A against A, TM-score 0.63

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