MolNFT v1 · #496390 · protein

AlphaFold monomer V2.0 prediction for vacuolar import and degradation protein 30 (P53076)

P53076: “AlphaFold monomer V2.0 prediction for vacuolar import and degradation protein 30 (P53076)”. 15 pockets (best druggability 0.61). MolNFT v1 #496390 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P53076
Type: protein
Length: 958 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x10b76e1579Af0AE150397F3a292746dC079eA377
Molecule: Vacuolar import and degradation protein 30
UniProt: P53076
Pockets: 15 · best druggability 0.61

Structure

1 distinct chain · 29% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Vacuolar import and degradation protein 30	protein	958	29% helix, 8% strand	P53076

Pockets

15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	366	0.61	0.77	38	empty
2	151	0.57	0.82	27	empty
3	183	0.56	0.80	24	empty
4	150	0.53	0.80	25	empty
5	291	0.52	0.74	27	empty

Compared structures

7NSB · Supramolecular assembly module of yeast chelator-gid SR4 E3 ubiquitin ligase · an experimental structure of the same protein · chain A against a, TM-score 0.38
6SWY · Structure of active gid E3 ubiquitin ligase complex minus GID2 and delta GID9 ring domain · an experimental structure of the same protein · chain A against 1, TM-score 0.34

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P53076
Elsewhere: UniProt P53076 · AlphaFold DB P53076

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