Research workbench
AlphaFold monomer V2.0 prediction for vacuolar import and degradation protein 30 (P53076)
Analyse AlphaFold monomer V2.0 prediction for vacuolar import and degradation protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P53076
- Type
- protein
- Length
- 958 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x10b76e1579Af0AE150397F3a292746dC079eA377
- Molecule
- Vacuolar import and degradation protein 30
- UniProt
- P53076
- Pockets
- 15 · best druggability 0.61
Structure
1 distinct chain · 29% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar import and degradation protein 30 | protein | 958 | 29% helix, 8% strand | P53076 |
Pockets
15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 366 | 0.61 | 0.77 | 38 | empty |
| 2 | 151 | 0.57 | 0.82 | 27 | empty |
| 3 | 183 | 0.56 | 0.80 | 24 | empty |
| 4 | 150 | 0.53 | 0.80 | 25 | empty |
| 5 | 291 | 0.52 | 0.74 | 27 | empty |
Compared structures
- 7NSB · Supramolecular assembly module of yeast chelator-gid SR4 E3 ubiquitin ligase · an experimental structure of the same protein · chain A against a, TM-score 0.38
- 7NSB · Supramolecular assembly module of yeast Chelator-GID SR4 E3 ubiquitin ligase · an experimental structure of the same protein · chain A against a, TM-score 0.38
- 6SWY · Structure of active gid E3 ubiquitin ligase complex minus GID2 and delta GID9 ring domain · an experimental structure of the same protein · chain A against 1, TM-score 0.34
- 6SWY · Structure of active GID E3 ubiquitin ligase complex minus Gid2 and delta Gid9 RING domain · an experimental structure of the same protein · chain A against 1, TM-score 0.34
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53076
- Elsewhere: UniProt P53076 · AlphaFold DB P53076
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