MolNFT v1 · #496260 · protein
AlphaFold monomer V2.0 prediction for type VI secretion system spike protein VGRG1 (A0KJB0)
A0KJB0: “AlphaFold monomer V2.0 prediction for type VI secretion system spike protein VGRG1 (A0KJB0)”. 8 pockets (best druggability 0.76). MolNFT v1 #496260 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- A0KJB0
- Type
- protein
- Length
- 743 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa8A1c7BA6D7bAf815aeb7e38575A232686180e38
- Molecule
- Type VI secretion system spike protein VGRG1
- UniProt
- A0KJB0
- Pockets
- 8 · best druggability 0.76
Structure
1 distinct chain · 10% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type VI secretion system spike protein VGRG1 | protein | 743 | 10% helix, 34% strand | A0KJB0 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 772 | 0.76 | 0.80 | 93 | empty |
| 2 | 137 | 0.55 | 0.82 | 29 | empty |
| 3 | 182 | 0.50 | 0.77 | 23 | empty |
| 4 | 176 | 0.48 | 0.76 | 28 | empty |
| 5 | 139 | 0.37 | 0.73 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0KJB0
- Elsewhere: UniProt A0KJB0 · AlphaFold DB A0KJB0
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