Research workbench
AlphaFold monomer V2.0 prediction for type VI secretion system spike protein VGRG1 (A0KJB0)
Analyse AlphaFold monomer V2.0 prediction for type VI secretion system spike protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0KJB0
- Type
- protein
- Length
- 743 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa8A1c7BA6D7bAf815aeb7e38575A232686180e38
- Molecule
- Type VI secretion system spike protein VGRG1
- UniProt
- A0KJB0
- Pockets
- 8 · best druggability 0.76
Structure
1 distinct chain · 10% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type VI secretion system spike protein VGRG1 | protein | 743 | 10% helix, 34% strand | A0KJB0 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 772 | 0.76 | 0.80 | 93 | empty |
| 2 | 137 | 0.55 | 0.82 | 29 | empty |
| 3 | 182 | 0.50 | 0.77 | 23 | empty |
| 4 | 176 | 0.48 | 0.76 | 28 | empty |
| 5 | 139 | 0.37 | 0.73 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0KJB0
- Elsewhere: UniProt A0KJB0 · AlphaFold DB A0KJB0
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