MolNFT v1 · #495999 · protein
AlphaFold monomer V2.0 prediction for vitamin D3 receptor (P13053)
P13053: “AlphaFold monomer V2.0 prediction for vitamin D3 receptor (P13053)”. 4 pockets (best druggability 0.86). MolNFT v1 #495999 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P13053
- Type
- protein
- Length
- 423 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x79a905d858Ce72991FD6E7a9C6498620f42E146D
- Molecule
- Vitamin D3 receptor
- UniProt
- P13053
- Pockets
- 4 · best druggability 0.86
Structure
1 distinct chain · 49% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vitamin D3 receptor | protein | 423 | 49% helix, 4% strand | P13053 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 294 | 0.86 | 0.96 | 36 | empty |
| 2 | 188 | 0.55 | 0.79 | 22 | empty |
| 3 | 51 | 0.30 | 0.76 | 10 | empty |
| 4 | 57 | 0.24 | 0.72 | 16 | empty |
Compared structures
- 5GIE · Crystal structure of VDR in complex with DLAM-4P (P21 form) · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 3VT3 · Crystal structures of rat VDR-LBD with R270L mutation · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 3VT3 · Crystal structures of rat vdr-lbd with R270L mutation · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 1RKG · Crystal structure of the rat vitamin D receptor ligand binding domain complexed with… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 1RKG · crystal structure of the rat vitamin D receptor ligand binding domain complexed with… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 3W0I · Crystal structure of rat vdr ligand binding domain in complex with novel nonsecosteroidal… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 3W0I · Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 3W0G · Crystal structure of rat vdr ligand binding domain in complex with novel nonsecosteroidal… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 3W0G · Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 3W0J · Crystal structure of rat vdr ligand binding domain in complex with novel nonsecosteroidal… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 3W0J · Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 2ZMI · Crystal structure of rat vitamin D receptor bound to adamantyl vitamin D analogs… · an experimental structure of the same protein · chain A against A, TM-score 0.56
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13053
- Elsewhere: UniProt P13053 · AlphaFold DB P13053
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