MolNFT v1 · #494955 · protein
AlphaFold monomer V2.0 prediction for TRNA(FMET)-specific endonuclease vapc (O06662)
O06662: “AlphaFold monomer V2.0 prediction for TRNA(FMET)-specific endonuclease vapc (O06662)”. 1 pocket (best druggability 0.34). MolNFT v1 #494955 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- O06662
- Type
- protein
- Length
- 132 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb1D0f67d3BC2C805BBB719Afc6DA02f0d03Dea70
- Molecule
- TRNA(FMET)-specific endonuclease vapc
- UniProt
- O06662
- Pockets
- 1 · best druggability 0.34
Structure
1 distinct chain · 57% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA(FMET)-specific endonuclease vapc | protein | 132 | 57% helix, 12% strand | O06662 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.34 | 0.77 | 12 | empty |
Compared structures
- 5ECY · Structure of the shigella flexneri vapc mutant D98N crystal form 2 · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 5ED0 · Structure of the shigella flexneri vapc mutant D7N · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 5ED0 · Structure of the Shigella flexneri VapC mutant D7N · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 5ECD · Structure of the shigella flexneri vapc mutant D98N crystal form 1 · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 5ECW · Structure of the shigella flexneri vapc mutant D7A · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 3TND · Crystal structure of shigella flexneri vapbc toxin-antitoxin complex · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3TND · Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex · an experimental structure of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O06662
- Elsewhere: UniProt O06662 · AlphaFold DB O06662
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