MolNFT v1 · #460069 · protein
AlphaFold monomer V2.0 prediction for T-complex protein 1 subunit delta (P39078)
P39078: “AlphaFold monomer V2.0 prediction for T-complex protein 1 subunit delta (P39078)”. 3 pockets (best druggability 0.77). MolNFT v1 #460069 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P39078
- Type
- protein
- Length
- 528 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEa58c7534E5701aA8370E0fAEb19b7e14653e69c
- Molecule
- T-complex protein 1 subunit delta
- UniProt
- P39078
- Pockets
- 3 · best druggability 0.77
Structure
1 distinct chain · 50% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | T-complex protein 1 subunit delta | protein | 528 | 50% helix, 17% strand | P39078 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 321 | 0.77 | 0.88 | 45 | empty |
| 2 | 183 | 0.43 | 0.73 | 28 | empty |
| 3 | 88 | 0.35 | 0.75 | 21 | empty |
Compared structures
- 4V94 · Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of… · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 6KS6 · Tric at 0.2 mm ADP-alfx, conformation 1, 0.2-C1 · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 6KS6 · TRiC at 0.2 mM ADP-AlFx, Conformation 1, 0.2-C1 · an experimental structure of the same protein · chain A against D, TM-score 0.92
- 7YLW · yeast TRiC-plp2-tubulin complex at S3 closed TRiC state · an experimental structure of the same protein · chain A against D, TM-score 0.91
- 7YLY · yeast TRiC-plp2 complex at S5 closed TRiC state · an experimental structure of the same protein · chain A against D, TM-score 0.91
- 7YLX · yeast TRiC-plp2-actin complex at S4 closed TRiC state · an experimental structure of the same protein · chain A against D, TM-score 0.91
- 4V8R · The crystal structures of the eukaryotic chaperonin CCT reveal its functional partitioning · an experimental structure of the same protein · chain A against AD, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39078
- Elsewhere: UniProt P39078 · AlphaFold DB P39078
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