MolNFT v1 · #450919 · protein

AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q9V011)

Q9V011: “AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q9V011)”. 5 pockets (best druggability 0.68). MolNFT v1 #450919 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q9V011
Type: protein
Length: 722 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xC8dF636DBC08E21eD2d86C34d2418bD10A06e71a
Molecule: Methionine--tRNA ligase
UniProt: Q9V011
Pockets: 5 · best druggability 0.68

Structure

1 distinct chain · 47% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Methionine--tRNA ligase	protein	722	47% helix, 20% strand	Q9V011

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	384	0.68	0.80	39	empty
2	270	0.54	0.76	42	empty
3	87	0.42	0.78	21	empty
4	104	0.41	0.76	17	empty
5	83	0.34	0.75	20	empty

Compared structures

1RQG · Methionyl-tRNA synthetase from Pyrococcus abyssi · an experimental structure of the same protein · chain A against A, TM-score 0.81
1RQG · Methionyl-tRNA synthetase from pyrococcus abyssi · an experimental structure of the same protein · chain A against A, TM-score 0.81
1MKH · C-terminal domain of methionyl-tRNA synthetase from pyrococcus abyssi · an experimental structure of the same protein · chain A against A, TM-score 0.15
1MKH · C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi · an experimental structure of the same protein · chain A against A, TM-score 0.15

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9V011
Elsewhere: UniProt Q9V011 · AlphaFold DB Q9V011

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