Research workbench
AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q9V011)
Analyse AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q9V011) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9V011
- Type
- protein
- Length
- 722 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC8dF636DBC08E21eD2d86C34d2418bD10A06e71a
- Molecule
- Methionine--tRNA ligase
- UniProt
- Q9V011
- Pockets
- 5 · best druggability 0.68
Structure
1 distinct chain · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine--tRNA ligase | protein | 722 | 47% helix, 20% strand | Q9V011 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 384 | 0.68 | 0.80 | 39 | empty |
| 2 | 270 | 0.54 | 0.76 | 42 | empty |
| 3 | 87 | 0.42 | 0.78 | 21 | empty |
| 4 | 104 | 0.41 | 0.76 | 17 | empty |
| 5 | 83 | 0.34 | 0.75 | 20 | empty |
Compared structures
- 1RQG · Methionyl-tRNA synthetase from Pyrococcus abyssi · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 1RQG · Methionyl-tRNA synthetase from pyrococcus abyssi · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 1MKH · C-terminal domain of methionyl-tRNA synthetase from pyrococcus abyssi · an experimental structure of the same protein · chain A against A, TM-score 0.15
- 1MKH · C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi · an experimental structure of the same protein · chain A against A, TM-score 0.15
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V011
- Elsewhere: UniProt Q9V011 · AlphaFold DB Q9V011
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