MolNFT v1 · #437365 · protein

AlphaFold monomer V2.0 prediction for protein SSD1 (P24276)

P24276: “AlphaFold monomer V2.0 prediction for protein SSD1 (P24276)”. 20 pockets (best druggability 0.87). MolNFT v1 #437365 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P24276
Type: protein
Length: 1,250 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x37bAB7fc0451651dB758C1cd578E0942699434A9
Molecule: Protein SSD1
UniProt: P24276
Pockets: 20 · best druggability 0.87

Structure

1 distinct chain · 27% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein SSD1	protein	1250	27% helix, 16% strand	P24276

Pockets

20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	555	0.87	0.93	83	empty
2	194	0.76	0.92	51	empty
3	156	0.73	0.92	27	empty
4	66	0.72	0.97	23	empty
5	65	0.71	0.97	25	empty

Compared structures

7AM1 · Structure of yeast SSD1, a pseudonuclease · an experimental structure of the same protein · chain A against B, TM-score 0.64
7AM1 · Structure of yeast Ssd1, a pseudonuclease · an experimental structure of the same protein · chain A against B, TM-score 0.64
5NCL · Crystal structure of the CBK1-MOB2 kinase-coactivator complex with an SSD1 peptide · an experimental structure of the same protein · chain A against D, TM-score 0.00
5NCL · Crystal structure of the Cbk1-Mob2 kinase-coactivator complex with an SSD1 peptide · an experimental structure of the same protein · chain A against D, TM-score 0.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24276
Elsewhere: UniProt P24276 · AlphaFold DB P24276

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