Research workbench
AlphaFold monomer V2.0 prediction for protein SSD1 (P24276)
Analyse AlphaFold monomer V2.0 prediction for protein SSD1 (P24276) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P24276
- Type
- protein
- Length
- 1,250 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x37bAB7fc0451651dB758C1cd578E0942699434A9
- Molecule
- Protein SSD1
- UniProt
- P24276
- Pockets
- 20 · best druggability 0.87
Structure
1 distinct chain · 27% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein SSD1 | protein | 1250 | 27% helix, 16% strand | P24276 |
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 555 | 0.87 | 0.93 | 83 | empty |
| 2 | 194 | 0.76 | 0.92 | 51 | empty |
| 3 | 156 | 0.73 | 0.92 | 27 | empty |
| 4 | 66 | 0.72 | 0.97 | 23 | empty |
| 5 | 65 | 0.71 | 0.97 | 25 | empty |
Compared structures
- 7AM1 · Structure of yeast SSD1, a pseudonuclease · an experimental structure of the same protein · chain A against B, TM-score 0.64
- 7AM1 · Structure of yeast Ssd1, a pseudonuclease · an experimental structure of the same protein · chain A against B, TM-score 0.64
- 5NCL · Crystal structure of the CBK1-MOB2 kinase-coactivator complex with an SSD1 peptide · an experimental structure of the same protein · chain A against D, TM-score 0.00
- 5NCL · Crystal structure of the Cbk1-Mob2 kinase-coactivator complex with an SSD1 peptide · an experimental structure of the same protein · chain A against D, TM-score 0.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24276
- Elsewhere: UniProt P24276 · AlphaFold DB P24276
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