MolNFT v1 · #436253 · protein
AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein, chloroplastic (P37107)
P37107: “AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein, chloroplastic (P37107)”. 3 pockets (best druggability 0.35). MolNFT v1 #436253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P37107
- Type
- protein
- Length
- 564 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBF0D2e107Ce1EcD2C4369B042274201DB719AaAF
- Molecule
- Signal recognition particle 54 kda protein, chloroplastic
- UniProt
- P37107
- Pockets
- 3 · best druggability 0.35
Structure
1 distinct chain · 52% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Signal recognition particle 54 kda protein, chloroplastic | protein | 564 | 52% helix, 7% strand | P37107 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.35 | 0.76 | 15 | empty |
| 2 | 50 | 0.30 | 0.77 | 18 | empty |
| 3 | 69 | 0.29 | 0.73 | 12 | empty |
Compared structures
- 5L3R · Structure of the GTPase heterodimer of chloroplast SRP54 and FtsY from Arabidopsis… · an experimental structure of the same protein · chain A against C, TM-score 0.46
- 5L3R · Structure of the GTPase heterodimer of chloroplast SRP54 and ftsy from arabidopsis… · an experimental structure of the same protein · chain A against C, TM-score 0.46
- 3UI2 · Crystal structure of the cpSRP54 tail bound to cpSRP43 · an experimental structure of the same protein · chain A against B, TM-score 0.02
- 3UI2 · Crystal structure of the CPSRP54 tail bound to CPSRP43 · an experimental structure of the same protein · chain A against B, TM-score 0.02
- 2HUG · 3D solution structure of the chromo-2 domain of CPSRP43 complexed with CPSRP54 peptide · an experimental structure of the same protein · chain A against B, TM-score 0.02
- 2HUG · 3D Solution Structure of the Chromo-2 Domain of cpSRP43 complexed with cpSRP54 peptide · an experimental structure of the same protein · chain A against B, TM-score 0.02
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37107
- Elsewhere: UniProt P37107 · AlphaFold DB P37107
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