Research workbench
AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein, chloroplastic (P37107)
Analyse AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P37107
- Type
- protein
- Length
- 564 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBF0D2e107Ce1EcD2C4369B042274201DB719AaAF
- Molecule
- Signal recognition particle 54 kda protein, chloroplastic
- UniProt
- P37107
- Pockets
- 3 · best druggability 0.35
Structure
1 distinct chain · 52% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Signal recognition particle 54 kda protein, chloroplastic | protein | 564 | 52% helix, 7% strand | P37107 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.35 | 0.76 | 15 | empty |
| 2 | 50 | 0.30 | 0.77 | 18 | empty |
| 3 | 69 | 0.29 | 0.73 | 12 | empty |
Compared structures
- 5L3R · Structure of the GTPase heterodimer of chloroplast SRP54 and FtsY from Arabidopsis… · an experimental structure of the same protein · chain A against C, TM-score 0.46
- 5L3R · Structure of the GTPase heterodimer of chloroplast SRP54 and ftsy from arabidopsis… · an experimental structure of the same protein · chain A against C, TM-score 0.46
- 3UI2 · Crystal structure of the cpSRP54 tail bound to cpSRP43 · an experimental structure of the same protein · chain A against B, TM-score 0.02
- 3UI2 · Crystal structure of the CPSRP54 tail bound to CPSRP43 · an experimental structure of the same protein · chain A against B, TM-score 0.02
- 2HUG · 3D solution structure of the chromo-2 domain of CPSRP43 complexed with CPSRP54 peptide · an experimental structure of the same protein · chain A against B, TM-score 0.02
- 2HUG · 3D Solution Structure of the Chromo-2 Domain of cpSRP43 complexed with cpSRP54 peptide · an experimental structure of the same protein · chain A against B, TM-score 0.02
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37107
- Elsewhere: UniProt P37107 · AlphaFold DB P37107
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