MolNFT v1 · #423301 · protein
AlphaFold monomer V2.0 prediction for protein transport protein SEC13 (Q04491)
Q04491: “AlphaFold monomer V2.0 prediction for protein transport protein SEC13 (Q04491)”. 2 pockets (best druggability 0.73). MolNFT v1 #423301 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q04491
- Type
- protein
- Length
- 297 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x738c1929c69B751bD0Be0B962D9bac20B631aAc6
- Molecule
- Protein transport protein SEC13
- UniProt
- Q04491
- Pockets
- 2 · best druggability 0.73
Structure
1 distinct chain · 2% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein transport protein SEC13 | protein | 297 | 2% helix, 54% strand | Q04491 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 873 | 0.73 | 0.77 | 65 | empty |
| 2 | 89 | 0.48 | 0.82 | 17 | empty |
Compared structures
- 3MZK · Sec13/Sec16 complex, S.cerevisiae · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 3MZK · SEC13/SEC16 complex, S.CEREVISIAE · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 2PM6 · Crystal Structure of yeast Sec13/31 edge element of the COPII vesicular coat, native… · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 2PM6 · Crystal structure of yeast SEC13/31 edge element of the copii vesicular coat, native… · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 2PM7 · Crystal structure of yeast SEC13/31 edge element of the copii vesicular coat… · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 2PM7 · Crystal structure of yeast Sec13/31 edge element of the COPII vesicular coat… · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 3MZL · SEC13/SEC31 edge element, loop deletion mutant · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 3MZL · Sec13/Sec31 edge element, loop deletion mutant · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 2PM9 · Crystal structure of yeast Sec13/31 vertex element of the COPII vesicular coat · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 2PM9 · Crystal structure of yeast SEC13/31 vertex element of the copii vesicular coat · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 4BZJ · The structure of the COPII coat assembled on membranes · an experimental structure of the same protein · chain A against F, TM-score 0.93
- 4BZK · The structure of the COPII coat assembled on membranes · an experimental structure of the same protein · chain A against F, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04491
- Elsewhere: UniProt Q04491 · AlphaFold DB Q04491
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