MolNFT v1 · #420674 · protein
AlphaFold monomer V2.0 prediction for peptide antibiotic transporter sbma (P0AFY6)
P0AFY6: “AlphaFold monomer V2.0 prediction for peptide antibiotic transporter sbma (P0AFY6)”. 3 pockets (best druggability 0.79). MolNFT v1 #420674 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0AFY6
- Type
- protein
- Length
- 406 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5f589287314FcB5B87F1F71E7db97a0D3F14CeaE
- Molecule
- Peptide antibiotic transporter sbma
- UniProt
- P0AFY6
- Pockets
- 3 · best druggability 0.79
Structure
1 distinct chain · 81% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide antibiotic transporter sbma | protein | 406 | 81% helix, 1% strand | P0AFY6 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 916 | 0.79 | 0.81 | 67 | empty |
| 2 | 187 | 0.45 | 0.74 | 26 | empty |
| 3 | 127 | 0.38 | 0.73 | 17 | empty |
Compared structures
- 7P34 · Cryo-EM structure of the proton-dependent antibacterial peptide transporter sbma-FABS11-1… · an experimental structure of the same protein · chain A against A, TM-score 0.72
- 7P34 · Cryo-EM structure of the proton-dependent antibacterial peptide transporter SbmA-FabS11-1… · an experimental structure of the same protein · chain A against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AFY6
- Elsewhere: UniProt P0AFY6 · AlphaFold DB P0AFY6
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