MolNFT v1 · #405150 · protein
AlphaFold monomer V2.0 prediction for 30S ribosomal protein S3 (A1AGK2)
A1AGK2: “AlphaFold monomer V2.0 prediction for 30S ribosomal protein S3 (A1AGK2)”. 3 pockets (best druggability 0.64). MolNFT v1 #405150 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- A1AGK2
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- 30S ribosomal protein S3
- UniProt
- A1AGK2
- Pockets
- 3 · best druggability 0.64
Structure
1 distinct chain · 38% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S3 | protein | 233 | 38% helix, 28% strand | A1AGK2 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 596 | 0.64 | 0.75 | 56 | empty |
| 2 | 64 | 0.37 | 0.78 | 15 | empty |
| 3 | 68 | 0.33 | 0.75 | 13 | empty |
Compared structures
- 2YKR · 30S ribosomal subunit with RsgA bound in the presence of GMPPNP · an experimental structure of the same protein · chain A against C, TM-score 0.77
- 2YKR · 30S ribosomal subunit with rsga bound in the presence of gmppnp · an experimental structure of the same protein · chain A against C, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1AGK2
- Elsewhere: UniProt A1AGK2 · AlphaFold DB A1AGK2
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