MolNFT v1 · #55451 · protein + RNA

30S ribosomal subunit with rsga bound in the presence of gmppnp

2YKR: “30S ribosomal subunit with rsga bound in the presence of gmppnp”. Electron microscopy. MolNFT v1 #55451 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2YKR
Type: protein + RNA
Length: 4,165 residues
Chains: 22
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: B7NID0, A1AGK2, A1AGI7, D6JG86, B6I2A6, E3XT25, B6I220, Q0TCN6, A7ZSL0, B7M103, P0A7S4, A1AGI9, B7M1M1, B3HGB0, B7N6J5, P0AG65, E3PE70, B6I230, B7L4E5, B1LF57, E3PE32

Structure

electron microscopy · 22 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	rna	1533	—	—
B	—	protein	218	—	B7NID0
C	—	protein	206	—	A1AGK2
D	—	protein	205	—	A1AGI7
E	—	protein	150	—	D6JG86
F	—	protein	100	—	B6I2A6
G	—	protein	151	—	E3XT25
H	—	protein	129	—	B6I220
I	—	protein	127	—	Q0TCN6
J	—	protein	98	—	A7ZSL0
K	—	protein	117	—	B7M103
L	—	protein	123	—	P0A7S4
M	—	protein	114	—	A1AGI9
N	—	protein	96	—	B7M1M1
O	—	protein	88	—	B3HGB0
P	—	protein	82	—	B7N6J5
Q	—	protein	80	—	P0AG65
R	—	protein	55	—	E3PE70
S	—	protein	79	—	B6I230
T	—	protein	85	—	B7L4E5
U	—	protein	51	—	B1LF57
W	—	protein	278	—	E3PE32

Compared structures

2YKR · 30S ribosomal subunit with RsgA bound in the presence of GMPPNP · the same entry in another collection · chain K against K, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B7NID0
Every structure of UniProt A1AGK2
Every structure of UniProt A1AGI7
Every structure of UniProt D6JG86
Every structure of UniProt B6I2A6
Every structure of UniProt E3XT25
Every structure of UniProt B6I220
Every structure of UniProt Q0TCN6
Every structure of UniProt A7ZSL0
Every structure of UniProt B7M103
Every structure of UniProt P0A7S4
Every structure of UniProt A1AGI9
Every structure of UniProt B7M1M1
Every structure of UniProt B3HGB0
Every structure of UniProt B7N6J5
Every structure of UniProt P0AG65
Every structure of UniProt E3PE70
Every structure of UniProt B6I230
Every structure of UniProt B7L4E5
Every structure of UniProt B1LF57
Every structure of UniProt E3PE32
Elsewhere: RCSB PDB 2YKR · PDBe 2YKR · UniProt B7NID0 · UniProt A1AGK2 · UniProt A1AGI7 · UniProt D6JG86 · UniProt B6I2A6 · UniProt E3XT25 · UniProt B6I220 · UniProt Q0TCN6 · UniProt A7ZSL0 · UniProt B7M103 · UniProt P0A7S4 · UniProt A1AGI9 · UniProt B7M1M1 · UniProt B3HGB0 · UniProt B7N6J5 · UniProt P0AG65 · UniProt E3PE70 · UniProt B6I230 · UniProt B7L4E5 · UniProt B1LF57 · UniProt E3PE32

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