MolNFT v1 · #388856 · protein
AlphaFold monomer V2.0 prediction for ecf RNA polymerase sigma factor rpoe (Q3IYV6)
Q3IYV6: “AlphaFold monomer V2.0 prediction for ecf RNA polymerase sigma factor rpoe (Q3IYV6)”. 2 pockets (best druggability 0.60). MolNFT v1 #388856 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q3IYV6
- Type
- protein
- Length
- 181 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x651ECcA3bde63cC986D874a2Eff5a08e3cf47daE
- Molecule
- Ecf RNA polymerase sigma factor rpoe
- UniProt
- Q3IYV6
- Pockets
- 2 · best druggability 0.60
Structure
1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ecf RNA polymerase sigma factor rpoe | protein | 181 | 72% helix, 0% strand | Q3IYV6 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 538 | 0.60 | 0.73 | 48 | empty |
| 2 | 65 | 0.33 | 0.76 | 14 | empty |
Compared structures
- 2Z2S · Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR · an experimental structure of the same protein · chain A against C, TM-score 0.54
- 2Z2S · Crystal structure of rhodobacter sphaeroides sige in complex with the anti-sigma chrr · an experimental structure of the same protein · chain A against C, TM-score 0.54
- 2Q1Z · Crystal structure of rhodobacter sphaeroides sige in complex with the anti-sigma chrr · an experimental structure of the same protein · chain A against A, TM-score 0.53
- 2Q1Z · Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR · an experimental structure of the same protein · chain A against A, TM-score 0.53
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3IYV6
- Elsewhere: UniProt Q3IYV6 · AlphaFold DB Q3IYV6
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