Research workbench
AlphaFold monomer V2.0 prediction for ecf RNA polymerase sigma factor rpoe (Q3IYV6)
Analyse AlphaFold monomer V2.0 prediction for ecf RNA polymerase sigma factor rpoe… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3IYV6
- Type
- protein
- Length
- 181 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x651ECcA3bde63cC986D874a2Eff5a08e3cf47daE
- Molecule
- Ecf RNA polymerase sigma factor rpoe
- UniProt
- Q3IYV6
- Pockets
- 2 · best druggability 0.60
Structure
1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ecf RNA polymerase sigma factor rpoe | protein | 181 | 72% helix, 0% strand | Q3IYV6 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 538 | 0.60 | 0.73 | 48 | empty |
| 2 | 65 | 0.33 | 0.76 | 14 | empty |
Compared structures
- 2Z2S · Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR · an experimental structure of the same protein · chain A against C, TM-score 0.54
- 2Z2S · Crystal structure of rhodobacter sphaeroides sige in complex with the anti-sigma chrr · an experimental structure of the same protein · chain A against C, TM-score 0.54
- 2Q1Z · Crystal structure of rhodobacter sphaeroides sige in complex with the anti-sigma chrr · an experimental structure of the same protein · chain A against A, TM-score 0.53
- 2Q1Z · Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR · an experimental structure of the same protein · chain A against A, TM-score 0.53
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3IYV6
- Elsewhere: UniProt Q3IYV6 · AlphaFold DB Q3IYV6
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