MolNFT v1 · #388839 · protein

AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q87DT7)

Q87DT7: “AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q87DT7)”. 7 pockets (best druggability 0.71). MolNFT v1 #388839 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q87DT7
Type: protein
Length: 618 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xbDA05C32aD6eE153C8C5A78dfa48d7Ba25694fea
Molecule: RNA polymerase sigma factor rpod
UniProt: Q87DT7
Pockets: 7 · best druggability 0.71

Structure

1 distinct chain · 67% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase sigma factor rpod	protein	618	67% helix, 2% strand	Q87DT7

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	785	0.71	0.77	54	empty
2	280	0.58	0.78	35	empty
3	64	0.56	0.88	22	empty
4	105	0.37	0.75	19	empty
5	119	0.35	0.72	17	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q87DT7
Elsewhere: UniProt Q87DT7 · AlphaFold DB Q87DT7

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