Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q87DT7)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q87DT7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q87DT7
- Type
- protein
- Length
- 618 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbDA05C32aD6eE153C8C5A78dfa48d7Ba25694fea
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q87DT7
- Pockets
- 7 · best druggability 0.71
Structure
1 distinct chain · 67% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 618 | 67% helix, 2% strand | Q87DT7 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 785 | 0.71 | 0.77 | 54 | empty |
| 2 | 280 | 0.58 | 0.78 | 35 | empty |
| 3 | 64 | 0.56 | 0.88 | 22 | empty |
| 4 | 105 | 0.37 | 0.75 | 19 | empty |
| 5 | 119 | 0.35 | 0.72 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87DT7
- Elsewhere: UniProt Q87DT7 · AlphaFold DB Q87DT7
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