MolNFT v1 · #388838 · protein

AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q9PDM9)

Q9PDM9: “AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q9PDM9)”. 5 pockets (best druggability 0.70). MolNFT v1 #388838 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q9PDM9
Type: protein
Length: 618 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x1b399A5111673d28Cf7cc78c1b3eBE7668606558
Molecule: RNA polymerase sigma factor rpod
UniProt: Q9PDM9
Pockets: 5 · best druggability 0.70

Structure

1 distinct chain · 67% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase sigma factor rpod	protein	618	67% helix, 2% strand	Q9PDM9

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	777	0.70	0.77	57	empty
2	243	0.55	0.78	33	empty
3	136	0.54	0.81	34	empty
4	146	0.44	0.75	26	empty
5	73	0.35	0.75	14	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9PDM9
Elsewhere: UniProt Q9PDM9 · AlphaFold DB Q9PDM9

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