Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q9PDM9)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q9PDM9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9PDM9
- Type
- protein
- Length
- 618 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1b399A5111673d28Cf7cc78c1b3eBE7668606558
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q9PDM9
- Pockets
- 5 · best druggability 0.70
Structure
1 distinct chain · 67% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 618 | 67% helix, 2% strand | Q9PDM9 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 777 | 0.70 | 0.77 | 57 | empty |
| 2 | 243 | 0.55 | 0.78 | 33 | empty |
| 3 | 136 | 0.54 | 0.81 | 34 | empty |
| 4 | 146 | 0.44 | 0.75 | 26 | empty |
| 5 | 73 | 0.35 | 0.75 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PDM9
- Elsewhere: UniProt Q9PDM9 · AlphaFold DB Q9PDM9
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