MolNFT v1 · #388815 · protein

AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P55993)

P55993: “AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P55993)”. 8 pockets (best druggability 0.62). MolNFT v1 #388815 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P55993
Type: protein
Length: 671 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
Molecule: RNA polymerase sigma factor rpod
UniProt: P55993
Pockets: 8 · best druggability 0.62

Structure

1 distinct chain · 72% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase sigma factor rpod	protein	671	72% helix, 1% strand	P55993

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	440	0.62	0.76	36	empty
2	100	0.54	0.84	18	empty
3	276	0.52	0.75	31	empty
4	133	0.42	0.74	16	empty
5	140	0.41	0.75	20	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P55993
Elsewhere: UniProt P55993 · AlphaFold DB P55993

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