Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P55993)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P55993) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P55993
- Type
- protein
- Length
- 671 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P55993
- Pockets
- 8 · best druggability 0.62
Structure
1 distinct chain · 72% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 671 | 72% helix, 1% strand | P55993 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 440 | 0.62 | 0.76 | 36 | empty |
| 2 | 100 | 0.54 | 0.84 | 18 | empty |
| 3 | 276 | 0.52 | 0.75 | 31 | empty |
| 4 | 133 | 0.42 | 0.74 | 16 | empty |
| 5 | 140 | 0.41 | 0.75 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55993
- Elsewhere: UniProt P55993 · AlphaFold DB P55993
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