MolNFT v1 · #388808 · protein

AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P32001)

P32001: “AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P32001)”. 5 pockets (best druggability 0.68). MolNFT v1 #388808 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P32001
Type: protein
Length: 617 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
Molecule: RNA polymerase sigma factor rpod
UniProt: P32001
Pockets: 5 · best druggability 0.68

Structure

1 distinct chain · 67% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase sigma factor rpod	protein	617	67% helix, 2% strand	P32001

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	618	0.68	0.77	43	empty
2	800	0.68	0.75	68	empty
3	105	0.39	0.75	16	empty
4	58	0.38	0.79	17	empty
5	58	0.34	0.77	14	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32001
Elsewhere: UniProt P32001 · AlphaFold DB P32001

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