Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P32001)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P32001) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P32001
- Type
- protein
- Length
- 617 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P32001
- Pockets
- 5 · best druggability 0.68
Structure
1 distinct chain · 67% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 617 | 67% helix, 2% strand | P32001 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 618 | 0.68 | 0.77 | 43 | empty |
| 2 | 800 | 0.68 | 0.75 | 68 | empty |
| 3 | 105 | 0.39 | 0.75 | 16 | empty |
| 4 | 58 | 0.38 | 0.79 | 17 | empty |
| 5 | 58 | 0.34 | 0.77 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32001
- Elsewhere: UniProt P32001 · AlphaFold DB P32001
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