AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit L (Q5JE88)

Structure

1 distinct chain · 41% helix, 29% strand (DSSP).

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Compared structures

• 9BCT · Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription… · an experimental structure of the same protein · chain A against L, TM-score 0.98
• 9BCU · Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription… · an experimental structure of the same protein · chain A against L, TM-score 0.98
• 4QIW · Crystal structure of euryarchaeal RNA polymerase from thermococcus kodakarensis · an experimental structure of the same protein · chain A against L, TM-score 0.95
• 4QIW · Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis · an experimental structure of the same protein · chain A against L, TM-score 0.95
• 6KF3 · Cryo-EM structure of Thermococcus kodakarensis RNA polymerase · an experimental structure of the same protein · chain A against L, TM-score 0.94
• 6KF3 · Cryo-EM structure of thermococcus kodakarensis RNA polymerase · an experimental structure of the same protein · chain A against L, TM-score 0.94
• 6KF9 · Cryo-EM structure of thermococcus kodakarensis RNA polymerase · an experimental structure of the same protein · chain A against L, TM-score 0.94
• 6KF9 · Cryo-EM structure of Thermococcus kodakarensis RNA polymerase · an experimental structure of the same protein · chain A against L, TM-score 0.94
• 4QJV · The X-ray crystal structure of RPO3/RPO11 heterodimer of euryarchaeal RNA polymerase from… · an experimental structure of the same protein · chain A against B, TM-score 0.94
• 4QJV · The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from… · an experimental structure of the same protein · chain A against B, TM-score 0.94
• 6KF4 · Cryo-EM structure of thermococcus kodakarensis RNA polymerase · an experimental structure of the same protein · chain A against L, TM-score 0.94
• 6KF4 · Cryo-EM structure of Thermococcus kodakarensis RNA polymerase · an experimental structure of the same protein · chain A against L, TM-score 0.94

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q5JE88
• Elsewhere: UniProt Q5JE88 · AlphaFold DB Q5JE88