MolNFT v1 · #385027 · protein
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerases II, IV and V subunit 9A (Q6NLH0)
Q6NLH0: “AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerases II, IV and V subunit 9A (Q6NLH0)”. 1 pocket (best druggability 0.34). MolNFT v1 #385027 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q6NLH0
- Type
- protein
- Length
- 114 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1ED4a68B4011314730adE976b56Ad4cA21b54dcD
- Molecule
- DNA-directed RNA polymerases II, IV and V subunit 9A
- UniProt
- Q6NLH0
- Pockets
- 1 · best druggability 0.34
Structure
1 distinct chain · 5% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerases II, IV and V subunit 9A | protein | 114 | 5% helix, 30% strand | Q6NLH0 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.34 | 0.76 | 13 | empty |
Compared structures
- 8XMC · Post-translocated Pol IV transcription elongation complex · an experimental structure of the same protein · chain A against I, TM-score 0.46
- 8XMD · Pre-translocated Pol IV transcription elongation complex · an experimental structure of the same protein · chain A against I, TM-score 0.46
- 8XME · Backtracked Pol IV transcription elongation complex · an experimental structure of the same protein · chain A against I, TM-score 0.46
- 7EU0 · The cryo-EM structure of a. thaliana pol IV-RDR2 backtracked complex · an experimental structure of the same protein · chain A against I, TM-score 0.46
- 7EU0 · The cryo-EM structure of A. thaliana Pol IV-RDR2 backtracked complex · an experimental structure of the same protein · chain A against I, TM-score 0.46
- 8XMB · NTP-bound Pol IV transcription elongation complex · an experimental structure of the same protein · chain A against I, TM-score 0.46
- 7EU1 · The cryo-EM structure of a. thaliana pol IV-RDR2 holoenzyme · an experimental structure of the same protein · chain A against I, TM-score 0.46
- 7EU1 · The cryo-EM structure of A. thaliana Pol IV-RDR2 holoenzyme · an experimental structure of the same protein · chain A against I, TM-score 0.46
- 8HYJ · A cryo-EM structure of KTF1-bound polymerase V transcription elongation complex · an experimental structure of the same protein · chain A against I, TM-score 0.39
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NLH0
- Elsewhere: UniProt Q6NLH0 · AlphaFold DB Q6NLH0
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