MolNFT v1 · #376219 · protein
AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (Q0VP26)
Q0VP26: “AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (Q0VP26)”. 4 pockets (best druggability 0.69). MolNFT v1 #376219 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q0VP26
- Type
- protein
- Length
- 445 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB35df660264f41795De49C83276C108A4ba91ADE
- Molecule
- 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
- UniProt
- Q0VP26
- Pockets
- 4 · best druggability 0.69
Structure
1 distinct chain · 27% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd | protein | 445 | 27% helix, 31% strand | Q0VP26 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 508 | 0.69 | 0.79 | 85 | empty |
| 2 | 73 | 0.33 | 0.75 | 14 | empty |
| 3 | 79 | 0.32 | 0.74 | 13 | empty |
| 4 | 60 | 0.31 | 0.76 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0VP26
- Elsewhere: UniProt Q0VP26 · AlphaFold DB Q0VP26
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