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AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (Q0VP26)

Analyse AlphaFold monomer V2.0 prediction for 23S rRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q0VP26
Type: protein
Length: 445 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xB35df660264f41795De49C83276C108A4ba91ADE
Molecule: 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
UniProt: Q0VP26
Pockets: 4 · best druggability 0.69

Structure

1 distinct chain · 27% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd	protein	445	27% helix, 31% strand	Q0VP26

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	508	0.69	0.79	85	empty
2	73	0.33	0.75	14	empty
3	79	0.32	0.74	13	empty
4	60	0.31	0.76	19	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0VP26
Elsewhere: UniProt Q0VP26 · AlphaFold DB Q0VP26

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