MolNFT v1 · #376216 · protein

AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (A1W8J9)

A1W8J9: “AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (A1W8J9)”. 4 pockets (best druggability 0.64). MolNFT v1 #376216 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: A1W8J9
Type: protein
Length: 482 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x7a1388B6Aad67B04634A32f63b8A6D6005eab86c
Molecule: 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
UniProt: A1W8J9
Pockets: 4 · best druggability 0.64

Structure

1 distinct chain · 28% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd	protein	482	28% helix, 27% strand	A1W8J9

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	522	0.64	0.76	63	empty
2	333	0.56	0.75	30	empty
3	63	0.30	0.75	16	empty
4	51	0.25	0.73	15	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A1W8J9
Elsewhere: UniProt A1W8J9 · AlphaFold DB A1W8J9

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