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AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (A1W8J9)
Analyse AlphaFold monomer V2.0 prediction for 23S rRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A1W8J9
- Type
- protein
- Length
- 482 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7a1388B6Aad67B04634A32f63b8A6D6005eab86c
- Molecule
- 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
- UniProt
- A1W8J9
- Pockets
- 4 · best druggability 0.64
Structure
1 distinct chain · 28% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd | protein | 482 | 28% helix, 27% strand | A1W8J9 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 522 | 0.64 | 0.76 | 63 | empty |
| 2 | 333 | 0.56 | 0.75 | 30 | empty |
| 3 | 63 | 0.30 | 0.75 | 16 | empty |
| 4 | 51 | 0.25 | 0.73 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1W8J9
- Elsewhere: UniProt A1W8J9 · AlphaFold DB A1W8J9
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