MolNFT v1 · #346967 · protein
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L13, chloroplastic (P12629)
P12629: “AlphaFold monomer V2.0 prediction for 50S ribosomal protein L13, chloroplastic (P12629)”. 3 pockets (best druggability 0.44). MolNFT v1 #346967 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P12629
- Type
- protein
- Length
- 250 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xeDe6FdB486740aA776Ade3705F18bEa30887dA64
- Molecule
- 50S ribosomal protein L13, chloroplastic
- UniProt
- P12629
- Pockets
- 3 · best druggability 0.44
Structure
1 distinct chain · 28% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L13, chloroplastic | protein | 250 | 28% helix, 12% strand | P12629 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.44 | 0.75 | 20 | empty |
| 2 | 117 | 0.41 | 0.76 | 22 | empty |
| 3 | 56 | 0.31 | 0.76 | 14 | empty |
Compared structures
- 5MMI · Structure of the large subunit of the chloroplast ribosome · an experimental structure of the same protein · chain A against K, TM-score 0.79
- 5MMI · Structure of the large subunit of the chloroplast ribosome · an experimental structure of the same protein · chain A against K, TM-score 0.79
- 5MMM · Structure of the 70S chloroplast ribosome · an experimental structure of the same protein · chain A against K, TM-score 0.79
- 6ERI · Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor · an experimental structure of the same protein · chain A against AJ, TM-score 0.78
- 5MLC · Cryo-EM structure of the spinach chloroplast ribosome reveals the location of… · an experimental structure of the same protein · chain A against L, TM-score 0.77
- 5MLC · Cryo-EM structure of the spinach chloroplast ribosome reveals the location of… · an experimental structure of the same protein · chain A against L, TM-score 0.77
- 5X8T · Structure of the 50S large subunit of chloroplast ribosome from spinach · an experimental structure of the same protein · chain A against K, TM-score 0.73
- 5X8T · Structure of the 50S large subunit of chloroplast ribosome from spinach · an experimental structure of the same protein · chain A against K, TM-score 0.73
- 5X8P · Structure of the 70S chloroplast ribosome from spinach · an experimental structure of the same protein · chain A against K, TM-score 0.73
- 5H1S · Structure of the large subunit of the chloro-ribosome · an experimental structure of the same protein · chain A against L, TM-score 0.58
- 5H1S · Structure of the large subunit of the chloro-ribosome · an experimental structure of the same protein · chain A against L, TM-score 0.58
- 4V61 · Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the… · an experimental structure of the same protein · chain A against BL, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12629
- Elsewhere: UniProt P12629 · AlphaFold DB P12629
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