MolNFT v1 · #346913 · protein
AlphaFold monomer V2.0 prediction for pre-rRNA-processing protein RIX1 (P38883)
P38883: “AlphaFold monomer V2.0 prediction for pre-rRNA-processing protein RIX1 (P38883)”. 5 pockets (best druggability 0.65). MolNFT v1 #346913 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P38883
- Type
- protein
- Length
- 763 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8719F119347D3c1a2ffc2ea3A2408f52f4c89F2A
- Molecule
- Pre-rRNA-processing protein RIX1
- UniProt
- P38883
- Pockets
- 5 · best druggability 0.65
Structure
1 distinct chain · 58% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pre-rRNA-processing protein RIX1 | protein | 763 | 58% helix, 1% strand | P38883 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 351 | 0.65 | 0.80 | 38 | empty |
| 2 | 153 | 0.57 | 0.82 | 21 | empty |
| 3 | 240 | 0.51 | 0.76 | 33 | empty |
| 4 | 52 | 0.29 | 0.75 | 13 | empty |
| 5 | 56 | 0.28 | 0.74 | 13 | empty |
Compared structures
- 6YLE · RIX1-REA1 pre-60S particle - RIX1-subcomplex, body 3 (rigid body refinement) · an experimental structure of the same protein · chain A against C, TM-score 0.70
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38883
- Elsewhere: UniProt P38883 · AlphaFold DB P38883
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