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AlphaFold monomer V2.0 prediction for pre-rRNA-processing protein RIX1 (P38883)

Analyse AlphaFold monomer V2.0 prediction for pre-rRNA-processing protein RIX1 (P38883) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P38883
Type: protein
Length: 763 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x8719F119347D3c1a2ffc2ea3A2408f52f4c89F2A
Molecule: Pre-rRNA-processing protein RIX1
UniProt: P38883
Pockets: 5 · best druggability 0.65

Structure

1 distinct chain · 58% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pre-rRNA-processing protein RIX1	protein	763	58% helix, 1% strand	P38883

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	351	0.65	0.80	38	empty
2	153	0.57	0.82	21	empty
3	240	0.51	0.76	33	empty
4	52	0.29	0.75	13	empty
5	56	0.28	0.74	13	empty

Compared structures

6YLE · RIX1-REA1 pre-60S particle - RIX1-subcomplex, body 3 (rigid body refinement) · an experimental structure of the same protein · chain A against C, TM-score 0.70
6YLE · Rix1-Rea1 pre-60S particle - Rix1-subcomplex, body 3 (rigid body refinement) · an experimental structure of the same protein · chain A against C, TM-score 0.70
6YLH · Rix1-Rea1 pre-60S particle - full composite structure · an experimental structure of the same protein · chain A against 6, TM-score 0.70

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38883
Elsewhere: UniProt P38883 · AlphaFold DB P38883

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