MolNFT v1 · #346127 · protein
AlphaFold monomer V2.0 prediction for ribosome-inactivating protein (P28522)
P28522: “AlphaFold monomer V2.0 prediction for ribosome-inactivating protein (P28522)”. 3 pockets (best druggability 0.68). MolNFT v1 #346127 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P28522
- Type
- protein
- Length
- 301 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7782F4817b37743d738e9aF842bf74bd50f2015E
- Molecule
- Ribosome-inactivating protein
- UniProt
- P28522
- Pockets
- 3 · best druggability 0.68
Structure
1 distinct chain · 43% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome-inactivating protein | protein | 301 | 43% helix, 13% strand | P28522 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 621 | 0.68 | 0.77 | 40 | empty |
| 2 | 100 | 0.38 | 0.75 | 19 | empty |
| 3 | 55 | 0.35 | 0.78 | 13 | empty |
Compared structures
- 2K6H · NMR structure of an unusually 28 kDa Active Mutant of Maize Ribosome-Inactivating protein… · an experimental structure of the same protein · chain A against A, TM-score 0.76
- 2K6H · NMR structure of an unusually 28 kda active mutant of maize ribosome- inactivating… · an experimental structure of the same protein · chain A against A, TM-score 0.76
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28522
- Elsewhere: UniProt P28522 · AlphaFold DB P28522
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