MolNFT v1 · #346011 · protein
AlphaFold monomer V2.0 prediction for ribosome-inactivating protein momordin I (P16094)
P16094: “AlphaFold monomer V2.0 prediction for ribosome-inactivating protein momordin I (P16094)”. 2 pockets (best druggability 0.57). MolNFT v1 #346011 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P16094
- Type
- protein
- Length
- 286 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa9d91429a19641abBA7FEA36c01c33066832ba58
- Molecule
- Ribosome-inactivating protein momordin I
- UniProt
- P16094
- Pockets
- 2 · best druggability 0.57
Structure
1 distinct chain · 37% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome-inactivating protein momordin I | protein | 286 | 37% helix, 22% strand | P16094 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 359 | 0.57 | 0.76 | 46 | empty |
| 2 | 79 | 0.34 | 0.75 | 17 | empty |
Compared structures
- 5CF9 · Cleavage of nicotinamide adenine dinucleotide by the ribosome inactivating protein of… · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 4YP2 · Cleavage of nicotinamide adenine dinucleotides by the ribosome inactivating protein from… · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 4YP2 · Cleavage of nicotinamide adenine dinucleotides by the ribosome inactivating protein from… · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 1AHA · The N-glycosidase mechanism of ribosome-inactivating proteins implied by crystal… · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 1AHA · The N-glycosidase mechanism of ribosome-inactivating proteins implied by crystal… · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 1MOM · Crystal structure of momordin, a type I ribosome inactivating protein from the seeds of… · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 1MOM · Crystal structure of momordin, a type I ribosome inactivating protein from the seeds of… · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 6LOW · Crystal structure of alpha-momorcharin in complex with gmp · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 6LOW · crystal structure of alpha-momorcharin in complex with GMP · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 6LOQ · Crystal structure of alpha-momorcharin in complex with camp · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 6LOQ · crystal structure of alpha-momorcharin in complex with cAMP · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 1AHC · The N-glycosidase mechanism of ribosome-inactivating proteins implied by crystal… · an experimental structure of the same protein · chain A against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16094
- Elsewhere: UniProt P16094 · AlphaFold DB P16094
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