MolNFT v1 · #339269 · protein
AlphaFold monomer V2.0 prediction for replication initiation protein (P03856)
P03856: “AlphaFold monomer V2.0 prediction for replication initiation protein (P03856)”. 1 pocket (best druggability 0.45). MolNFT v1 #339269 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P03856
- Type
- protein
- Length
- 251 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5e58272ea25a05e06901A2eAe9f63939b344e0c6
- Molecule
- Replication initiation protein
- UniProt
- P03856
- Pockets
- 1 · best druggability 0.45
Structure
1 distinct chain · 43% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Replication initiation protein | protein | 251 | 43% helix, 28% strand | P03856 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.45 | 0.75 | 24 | empty |
Compared structures
- 8AAN · The nucleoprotein complex of Rep protein with iteron containing dsDNA and DUE ssDNA. · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 7RVA · Updated Crystal Structure of Replication Initiator Protein REPE54. · an experimental structure of the same protein · chain A against C, TM-score 0.87
- 7RVA · Updated crystal structure of replication initiator protein REPE54. · an experimental structure of the same protein · chain A against C, TM-score 0.87
- 8AC8 · The nucleoprotein complex of Rep protein with DUE ssDNA · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 7U7O · Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and… · an experimental structure of the same protein · chain A against C, TM-score 0.85
- 1REP · Crystal structure of replication initiator protein REPE54 of mini-F plasmid complexed… · an experimental structure of the same protein · chain A against C, TM-score 0.85
- 1REP · Crystal structure of replication initiator protein REPE54 of mini-F plasmid complexed… · an experimental structure of the same protein · chain A against C, TM-score 0.85
- 8TIP · Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and… · an experimental structure of the same protein · chain A against C, TM-score 0.85
- 7UOG · Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and… · an experimental structure of the same protein · chain A against C, TM-score 0.84
- 8D86 · Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and… · an experimental structure of the same protein · chain A against C, TM-score 0.84
- 7UV6 · Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and… · an experimental structure of the same protein · chain A against C, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03856
- Elsewhere: UniProt P03856 · AlphaFold DB P03856
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