MolNFT v1 · #332171 · protein

AlphaFold monomer V2.0 prediction for putative DNA repair helicase radd (P33919)

P33919: “AlphaFold monomer V2.0 prediction for putative DNA repair helicase radd (P33919)”. 9 pockets (best druggability 0.73). MolNFT v1 #332171 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P33919
Type: protein
Length: 586 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x2B6383898c41F2462737128e3CAF97Eebe0482a0
Molecule: Putative DNA repair helicase radd
UniProt: P33919
Pockets: 9 · best druggability 0.73

Structure

1 distinct chain · 27% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative DNA repair helicase radd	protein	586	27% helix, 28% strand	P33919

Pockets

9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	909	0.73	0.77	79	empty
2	423	0.69	0.81	40	empty
3	198	0.59	0.81	31	empty
4	270	0.51	0.74	30	empty
5	119	0.47	0.79	17	empty

Compared structures

6JDE · crystal structure of a DNA repair protein · an experimental structure of the same protein · chain A against B, TM-score 0.82
6JDE · Crystal structure of a DNA repair protein · an experimental structure of the same protein · chain A against B, TM-score 0.82
7R7J · Crystal structure of radd with ADP · an experimental structure of the same protein · chain A against B, TM-score 0.81
8H5Z · Crystal structure of RadD/ATP analogue complex · an experimental structure of the same protein · chain A against B, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P33919
Elsewhere: UniProt P33919 · AlphaFold DB P33919

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