Research workbench
AlphaFold monomer V2.0 prediction for putative DNA repair helicase radd (P33919)
Analyse AlphaFold monomer V2.0 prediction for putative DNA repair helicase radd (P33919) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P33919
- Type
- protein
- Length
- 586 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x2B6383898c41F2462737128e3CAF97Eebe0482a0
- Molecule
- Putative DNA repair helicase radd
- UniProt
- P33919
- Pockets
- 9 · best druggability 0.73
Structure
1 distinct chain · 27% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative DNA repair helicase radd | protein | 586 | 27% helix, 28% strand | P33919 |
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 909 | 0.73 | 0.77 | 79 | empty |
| 2 | 423 | 0.69 | 0.81 | 40 | empty |
| 3 | 198 | 0.59 | 0.81 | 31 | empty |
| 4 | 270 | 0.51 | 0.74 | 30 | empty |
| 5 | 119 | 0.47 | 0.79 | 17 | empty |
Compared structures
- 6JDE · crystal structure of a DNA repair protein · an experimental structure of the same protein · chain A against B, TM-score 0.82
- 6JDE · Crystal structure of a DNA repair protein · an experimental structure of the same protein · chain A against B, TM-score 0.82
- 8H5Y · Crystal structure of RadD- ADP complex · an experimental structure of the same protein · chain A against B, TM-score 0.82
- 7R7J · Crystal structure of RadD with ADP · an experimental structure of the same protein · chain A against B, TM-score 0.81
- 7R7J · Crystal structure of radd with ADP · an experimental structure of the same protein · chain A against B, TM-score 0.81
- 8H5Z · Crystal structure of RadD/ATP analogue complex · an experimental structure of the same protein · chain A against B, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33919
- Elsewhere: UniProt P33919 · AlphaFold DB P33919
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