MolNFT v1 · #313972 · protein
AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (Q8DIF8)
Q8DIF8: “AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (Q8DIF8)”. 5 pockets (best druggability 0.64). MolNFT v1 #313972 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q8DIF8
- Type
- protein
- Length
- 461 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x86CC08B8660Fa01B25046dEAd64f4F553fa9FA76
- Molecule
- Photosystem II CP43 reaction center protein
- UniProt
- Q8DIF8
- Pockets
- 5 · best druggability 0.64
Structure
1 distinct chain · 56% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II CP43 reaction center protein | protein | 461 | 56% helix, 5% strand | Q8DIF8 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 623 | 0.64 | 0.74 | 54 | empty |
| 2 | 411 | 0.62 | 0.76 | 32 | empty |
| 3 | 277 | 0.60 | 0.79 | 36 | empty |
| 4 | 94 | 0.42 | 0.78 | 17 | empty |
| 5 | 71 | 0.34 | 0.75 | 18 | empty |
Compared structures
- 7YQ2 · Crystal structure of photosystem II expressing psbA2 gene only · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 7YQ7 · Crystal structure of photosystem II expressing psbA3 gene only · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 5ZZN · Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus… · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 5ZZN · Crystal structure of photosystem II from an sqdg-deficient mutant of thermosynechococcus… · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 4PBU · Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser… · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 4PBU · Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser… · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 5H2F · Crystal structure of the psbm-deletion mutant of photosystem II · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 5H2F · Crystal structure of the PsbM-deletion mutant of photosystem II · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 9EVX · cryoEM structure of Photosystem II averaged across S2-S3 states at 1.71 Angstrom… · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 8F4I · RT XFEL structure of Photosystem II 2000 microseconds after the third illumination at… · an experimental structure of the same protein · chain A against c, TM-score 0.98
- 8F4G · RT XFEL structure of Photosystem II 730 microseconds after the third illumination at 2.03… · an experimental structure of the same protein · chain A against c, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DIF8
- Elsewhere: UniProt Q8DIF8 · AlphaFold DB Q8DIF8
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