MolNFT v1 · #313966 · protein

AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P06003)

P06003: “AlphaFold monomer V2.0 prediction for photosystem II CP43 reaction center protein (P06003)”. 8 pockets (best druggability 0.63). MolNFT v1 #313966 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P06003
Type: protein
Length: 473 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x4d07E6a23DeB6B95bd9b90EcB67368b7e8D3B77e
Molecule: Photosystem II CP43 reaction center protein
UniProt: P06003
Pockets: 8 · best druggability 0.63

Structure

1 distinct chain · 55% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photosystem II CP43 reaction center protein	protein	473	55% helix, 5% strand	P06003

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	402	0.63	0.77	35	empty
2	502	0.61	0.74	48	empty
3	278	0.60	0.79	34	empty
4	83	0.37	0.77	15	empty
5	62	0.32	0.75	12	empty

Compared structures

3JCU · Cryo-EM structure of spinach psii-lhcii supercomplex at 3.2 ångström resolution · an experimental structure of the same protein · chain A against C, TM-score 0.94
3JCU · Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution · an experimental structure of the same protein · chain A against C, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06003
Elsewhere: UniProt P06003 · AlphaFold DB P06003

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